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Source database (GenBank or RefSeq) File type

ASM105013v1

Organism name:: Cyclobacterium amurskyense (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: KCTC 12363
BioSample:: SAMN03846661
BioProject:: PRJNA289169
Submitter:: Korea Research Institute of Bioscience and Biotechnology
Date:: 2015/07/08
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001050135.1 (latest)
RefSeq assembly accession:: GCF_001050135.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SMRT Analysis v. 2.3.0
Genome coverage:: 101x
Sequencing technology:: PacBio RS II with P6-C4 chemistry

IDs: 361981 [UID] 1860798 [GenBank] 1861868 [RefSeq]

See Genome Information for Cyclobacterium amurskyense

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001050135.1	=	GCF_001050135.1	ASM105013v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::10/20/2023 03:00:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,844
CDSs (total)::4,790
Genes (coding)::4,776
CDSs (with protein)::4,776
Genes (RNA)::54
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::39
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::1 of 14
Pseudo Genes (incomplete)::11 of 14
Pseudo Genes (internal stop)::3 of 14
Pseudo Genes (multiple problems)::1 of 14
##Genome-Annotation-Data-END##

MIGS-Data

##MIGS-Data-START##investigation_type::bacteria_archaea
project_name::Genome sequencing of Cyclobacterium amurskyense KCTC 12363
lat_lon::43.1N 131.733333E
depth::Missing
alt_elev::Missing
environment::water
country::Russia
collection_date::2000-06
env_biome::ENVO:00000447
env_feature::ENVO:00000032
env_material::ENVO:00002149
ploidy::haploid
num_replicons::1
ref_biomaterial::PMID 16280502
source_mat_id::KCTC 12363
biotic_relationship::free living
trophic_level::chemoorganotroph
rel_to_oxygen::obligate aerobe
isol_growth_condt::PMID 16280502
sequencing_meth::PacBio RS II sequencing
assembly::SMRT Analysis v2.3.0
finishing_strategy::complete; 101X coverage; 1 contig
annot_source::prodigal v2.6.1
##MIGS-Data-END##

Global statistics

Total sequence length	6,158,829
Total ungapped length	6,158,829
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	83.89	55.94	55.31

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ASM105013v1

See Genome Information for Cyclobacterium amurskyense

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

MIGS-Data

Global statistics

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