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ASM104487v1

Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: RIVM BC 964
BioSample:
SAMN03325945
BioProject:
PRJNA274235
Submitter:
TU Muenchen
Date:
2015/07/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001044875.1 (latest)
RefSeq assembly accession:
GCF_001044875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LABQ01
Assembly method:
ABySS v. 1.3.7
Expected final version:
yes
Genome coverage:
194x
Sequencing technology:
Illumina

IDs: 358891 [UID] 1851598 [GenBank] 1858088 [RefSeq]

See Genome Information for Bacillus cereus

There are 2513 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/04/2015 12:46:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10 (rev. 463717)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,853
CDS::5,656
Pseudo Genes::129
rRNAs::30 (5S, 16S, 23S)
tRNAs::53
ncRNA::1
Frameshifted Genes::67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,791,233
Total ungapped length5,787,264
Gaps between scaffolds0
Number of scaffolds78
Scaffold N50136,264
Scaffold L5011
Number of contigs124
Contig N50118,235
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)78

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,791,233785,787,264136,264460

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_918184965.1Bacillus cereus ATCC 14579type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002119445.1Bacillus thuringiensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.3080.9587.36
Best-match type97.3184.0877.04

ANI result

Taxonomy check statusBest match statusComment
OKsynonym-matchna