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Pythium_insidiosum_1.0

Organism name:
Pythium insidiosum (oomycetes)
Infraspecific name:
Strain: Pi-s
BioSample:
SAMD00028776
BioProject:
PRJDB3817
Submitter:
King Mongkut's University of Technology Thonburi
Date:
2015/05/08
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001029375.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
BBXB01
Assembly method:
Newbler v. 2.8; ALLPATHS-LG v. 44588
Genome coverage:
434x
Sequencing technology:
454 GS FLX Titanium; Illumina HiSeq2000

IDs: 350781 [UID] 1814938 [GenBank]

See Genome Information for Pythium insidiosum

There are 15 assemblies for this organism

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History (Show revision history)

Comment

P. insidiosum strain Pi-S, which was isolated from a patient with vascular pythiosis (the most common form of P. insidiosum infection). Identity of the organism was checked by culture identification and homology analysis of rDNA sequence. The resulting gDNA ... underwent de novo whole genome sequencing using a combination of the Illumina HiSeq2000 platform by Yourgene Bioscience, Taiwan (http://www.yourgene.com.tw), and the 454 Genome Sequencer FLX Titanium platform by Genome Institute, National Center for Genetic Engineering and Biotechnology, Thailand (http://www4a.biotec.or.th/GI).  more

Global statistics

Total sequence length53,239,050
Total ungapped length47,897,963
Gaps between scaffolds0
Number of scaffolds1,192
Scaffold N50146,252
Scaffold L50114
Number of contigs2,963
Contig N5041,480
Contig L50328
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,192

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced53,239,0501,19247,897,963146,2521,7710
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