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ASM99826v1

Organism name:
candidate division CPR1 bacterium GW2011_GWA2_42_17 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN03319634
BioProject:
PRJNA273161
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2015/05/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_000998265.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LCCZ01
Assembly method:
idba_ud v. 1.1
Genome coverage:
17.17x
Sequencing technology:
Illumina HiSeq2000

IDs: 334971 [UID] 1763288 [GenBank]

See Genome Information for candidate division CPR1 bacterium GW2011_GWA2_42_17

History (Show revision history)

Comment

Global statistics

Total sequence length691,409
Total ungapped length690,835
Gaps between scaffolds0
Number of scaffolds62
Scaffold N5012,918
Scaffold L5018
Number of contigs73
Contig N5012,781
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)62

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced691,40962690,83512,918110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
candidate division CPR1 bacterium GW2011_GWA2_42_17candidate division CPR1 bacterium GW2011_GWA2_42_17

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_901542405.1Gordonia terraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.260.050.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena