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ASM98809v1

Organism name:: Kerstersia gyiorum (b-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: CG1
BioSample:: SAMN03573805
BioProject:: PRJNA282676
Submitter:: CDPH
Date:: 2016/05/31
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_000988095.1 (latest)
RefSeq assembly accession:: GCF_000988095.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: LBNE01
Assembly method:: SPAdes v. 3.5
Expected final version:: yes
Genome coverage:: 270.0x
Sequencing technology:: Nextera paired-end; Illumina

IDs: 750991 [UID] 3281488 [GenBank] 3404808 [RefSeq]

See Genome Information for Kerstersia gyiorum

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000988095.1	=	GCF_000988095.1	ASM98809v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/01/2015 13:34:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10 (rev. 463717)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,498
CDS::3,268
Pseudo Genes::176
rRNAs::3 (5S, 16S, 23S)
tRNAs::50
ncRNA::1
Frameshifted Genes::17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,943,087
Total ungapped length	3,942,947
Gaps between scaffolds	0
Number of scaffolds	32
Scaffold N50	223,310
Scaffold L50	4
Number of contigs	33
Contig N50	215,440
Contig L50	5
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	32

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Plasmid unnamed	CM004382.1	=	NZ_CM004382.1	0
unplaced	n/a	n/a	n/a	31

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,943,087	32	3,942,947	223,310	1
Plasmid unnamed	9,094	1	9,094	9,094	0
unplaced	3,933,993	31	3,933,853	223,310	1

	ANI	Query coverage	Subject coverage
Declared type	98.94	93.76	92.84
Best-match type	98.94	93.76	92.84

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ASM98809v1

See Genome Information for Kerstersia gyiorum

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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