Sc_YJM1356_v1

Organism name:: Saccharomyces cerevisiae YJM1356 (brewer's yeast)
Infraspecific name:: Strain: YJM1356
BioSample:: SAMN01923168
BioProject:: PRJNA189902
Submitter:: Duke University
Date:: 2017/01/23
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000977325.2 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
Genome coverage:: 400x
Sequencing technology:: Illumina Hiseq, 100x100 bp paired-end reads

IDs: 1318111 [UID] 5315038 [GenBank]

See Genome Information for Saccharomyces cerevisiae

Pathogen Detection Resources

There are 1619 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000977325.2	n/a	n/a	Sc_YJM1356_v1	Chromosome	Latest GenBank
GCA_000977325.1	n/a	n/a	Sc_YJM1356_v1	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	12,572,529
Total ungapped length	12,567,829
Gaps between scaffolds	0
Number of scaffolds	18
Scaffold N50	910,189
Scaffold L50	5
Number of contigs	65
Contig N50	895,478
Contig L50	6
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	18

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	CP004467.2	n/a	n/a
Chromosome II	CP004649.1	n/a	n/a
Chromosome III	CP006296.2	n/a	n/a
Chromosome IV	CP004717.2	n/a	n/a
Chromosome V	CP004812.2	n/a	n/a
Chromosome VI	CP004947.1	n/a	n/a
Chromosome VII	CP005251.2	n/a	n/a
Chromosome VIII	CP006084.2	n/a	n/a
Chromosome IX	CP005040.2	n/a	n/a
Chromosome X	CP005153.2	n/a	n/a
Chromosome XI	CP005348.2	n/a	n/a
Chromosome XII	CP006400.1	n/a	n/a
Chromosome XIII	CP005449.2	n/a	n/a
Chromosome XIV	CP005551.2	n/a	n/a
Chromosome XV	CP005645.2	n/a	n/a
Chromosome XVI	CP006176.2	n/a	n/a
Plasmid 2 micron	CP004549.1	n/a	n/a

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	12,487,680	17	12,482,980	910,189	47
Chromosome I	186,192	1	186,092	186,192	1
Chromosome II	795,217	1	794,617	795,217	6
Chromosome III	309,629	1	309,429	309,629	2
Chromosome IV	1,464,760	1	1,464,660	1,464,760	1
Chromosome V	549,981	1	549,781	549,981	2
Chromosome VI	236,301	1	236,101	236,301	2
Chromosome VII	1,042,595	1	1,042,495	1,042,595	1
Chromosome VIII	533,685	1	533,085	533,685	6
Chromosome IX	403,964	1	403,964	403,964	0
Chromosome X	710,256	1	710,056	710,256	2
Chromosome XI	662,827	1	662,727	662,827	1
Chromosome XII	1,960,646	1	1,959,846	1,960,646	8
Chromosome XIII	899,512	1	899,412	899,512	1
Chromosome XIV	758,452	1	758,052	758,452	4
Chromosome XV	1,057,171	1	1,056,571	1,057,171	6
Chromosome XVI	910,189	1	909,789	910,189	4
Plasmid 2 micron	6,303	1	6,303	6,303	0

Assembly

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Sc_YJM1356_v1

See Genome Information for Saccharomyces cerevisiae

Pathogen Detection Resources

There are 1619 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear