Sc_YJM1355_v1

Organism name:: Saccharomyces cerevisiae YJM1355 (brewer's yeast)
Infraspecific name:: Strain: YJM1355
BioSample:: SAMN01923167
BioProject:: PRJNA189901
Submitter:: Duke University
Date:: 2017/01/23
Release type:: minor
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000977295.3 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
Genome coverage:: 550x
Sequencing technology:: Illumina Hiseq, 100x100 bp paired-end reads

IDs: 14640351 [UID] 37927848 [GenBank]

See Genome Information for Saccharomyces cerevisiae

Pathogen Detection Resources

There are 1619 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000977295.3	n/a	n/a	Sc_YJM1355_v1	Chromosome	Latest GenBank
GCA_000977295.2	n/a	n/a	Sc_YJM1355_v1	Chromosome	Replaced GenBank
GCA_000977295.1	n/a	n/a	Sc_YJM1355_v1	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	12,942,988
Total ungapped length	12,936,088
Gaps between scaffolds	0
Number of scaffolds	18
Scaffold N50	912,538
Scaffold L50	5
Number of contigs	87
Contig N50	520,014
Contig L50	8
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	18

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	CP004466.1	n/a	n/a
Chromosome II	CP004648.2	n/a	n/a
Chromosome III	CP006295.2	n/a	n/a
Chromosome IV	CP004716.2	n/a	n/a
Chromosome V	CP004811.2	n/a	n/a
Chromosome VI	CP004946.2	n/a	n/a
Chromosome VII	CP005250.2	n/a	n/a
Chromosome VIII	CP006083.1	n/a	n/a
Chromosome IX	CP005039.2	n/a	n/a
Chromosome X	CP005152.2	n/a	n/a
Chromosome XI	CP005347.2	n/a	n/a
Chromosome XII	CP006399.1	n/a	n/a
Chromosome XIII	CP005448.2	n/a	n/a
Chromosome XIV	CP005550.2	n/a	n/a
Chromosome XV	CP005644.2	n/a	n/a
Chromosome XVI	CP006175.2	n/a	n/a
Plasmid 2 micron	CP004548.1	n/a	n/a

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	12,863,569	17	12,856,669	912,538	69
Chromosome I	201,067	1	200,767	201,067	3
Chromosome II	788,596	1	788,496	788,596	1
Chromosome III	316,894	1	316,494	316,894	4
Chromosome IV	1,474,672	1	1,474,372	1,474,672	3
Chromosome V	567,306	1	567,006	567,306	3
Chromosome VI	258,841	1	258,541	258,841	3
Chromosome VII	1,036,897	1	1,036,897	1,036,897	0
Chromosome VIII	530,164	1	529,564	530,164	6
Chromosome IX	408,641	1	408,541	408,641	1
Chromosome X	696,997	1	696,597	696,997	4
Chromosome XI	690,223	1	689,723	690,223	5
Chromosome XII	2,249,646	1	2,247,946	2,249,646	17
Chromosome XIII	896,021	1	895,821	896,021	2
Chromosome XIV	771,388	1	770,988	771,388	4
Chromosome XV	1,057,561	1	1,056,961	1,057,561	6
Chromosome XVI	912,538	1	911,838	912,538	7
Plasmid 2 micron	6,117	1	6,117	6,117	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Sc_YJM1355_v1

See Genome Information for Saccharomyces cerevisiae

Pathogen Detection Resources

There are 1619 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear