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Source database (GenBank or RefSeq) File type

ASM97509v1

Organism name:: Demequina aestuarii (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: NBRC 106260
BioSample:: SAMD00022562
BioProject:: PRJDB3263
Submitter:: National Institute of Technology and Evaluation Biological Resource Center
Date:: 2015/02/26
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000975095.1 (latest)
RefSeq assembly accession:: GCF_000975095.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: BBRD01
Assembly method:: Newbler v. 2.6
Genome coverage:: 104x
Sequencing technology:: Illumina MiSeq

IDs: 323671 [UID] 1731118 [GenBank] 3137858 [RefSeq]

See Genome Information for Demequina aestuarii

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000975095.1	=	GCF_000975095.1	ASM97509v1	Scaffold	Latest GenBank, Latest RefSeq

Comment



Strain NBRC 106260 available from NBRC culture collection (http://www.nbrc.nite.go.jp/e/).
The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.bio.nite.go.jp/ngac/e/project_wgs-e.html)  more

Global statistics

Total sequence length	2,790,392
Total ungapped length	2,790,153
Gaps between scaffolds	0
Number of scaffolds	6
Scaffold N50	2,471,443
Scaffold L50	1
Number of contigs	8
Contig N50	1,893,977
Contig L50	1
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	6

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	81.95	33.75	38.10

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ASM97509v1

See Genome Information for Demequina aestuarii

Pathogen Detection Resources

History (Show revision history)

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