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ASM97308v1

Organism name:
Sneathia vaginalis (fusobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SN35
BioSample:
SAMN03380727
BioProject:
PRJNA276758
Submitter:
Vaginal Human Microbiome Consortium
Date:
2015/04/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_000973085.1 (latest)
RefSeq assembly accession:
GCF_000973085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
200
Sequencing technology:
Sanger dideoxy sequencing; 454

IDs: 322541 [UID] 1728418 [GenBank] 1731818 [RefSeq]

See Genome Information for Sneathia vaginalis

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available Kimberly Jefferson (kkjefferson@vcu.edu)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2021 18:42:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,307
CDSs (total)::1,258
Genes (coding)::1,247
CDSs (with protein)::1,247
Genes (RNA)::49
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::11
CDSs (without protein)::11
Pseudo Genes (ambiguous residues)::0 of 11
Pseudo Genes (frameshifted)::5 of 11
Pseudo Genes (incomplete)::5 of 11
Pseudo Genes (internal stop)::3 of 11
Pseudo Genes (multiple problems)::2 of 11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,330,224
Total ungapped length1,330,224
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000973095.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011280.1=NZ_CP011280.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,330,224

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sneathia vaginalisSneathia vaginalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001517935.1Sneathia sanguinegenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.4935.5736.65

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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