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ASM97308v1

Organism name:
Sneathia amnii (fusobacteria)
Infraspecific name:
Strain: SN35
BioSample:
SAMN03380727
BioProject:
PRJNA276758
Submitter:
Vaginal Human Microbiome Consortium
Date:
2015/04/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000973085.1 (latest)
RefSeq assembly accession:
GCF_000973085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
200
Sequencing technology:
Sanger dideoxy sequencing; 454

IDs: 322541 [UID] 1728418 [GenBank] 1731818 [RefSeq]

See Genome Information for Sneathia amnii

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Bacteria available Kimberly Jefferson (kkjefferson@vcu.edu)

##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 02/10/2020 23:15:35
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation ... Pipeline (PGAP)
Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) :: 1,307
CDSs (total) :: 1,258
Genes (coding) :: 1,237
CDSs (with protein) :: 1,237
Genes (RNA) :: 49
rRNAs :: 4, 3, 3 (5S, 16S, 23S)
complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)
tRNAs :: 36
ncRNAs :: 3
Pseudo Genes (total) :: 21
CDSs (without protein) :: 21
Pseudo Genes (ambiguous residues) :: 0 of 21
Pseudo Genes (frameshifted) :: 10 of 21
Pseudo Genes (incomplete) :: 9 of 21
Pseudo Genes (internal stop) :: 6 of 21
Pseudo Genes (multiple problems) :: 4 of 21
##Genome-Annotation-Data-END##  more

Global statistics

Total sequence length1,330,224
Total ungapped length1,330,224
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000973095.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011280.1=NZ_CP011280.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,330,224
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