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ASM97043v1

Organism name:
Devosia limi DSM 17137 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 17137
BioSample:
SAMN03431279
BioProject:
PRJNA278773
Submitter:
Agriculture and Agri-Food Canada
Date:
2015/04/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000970435.1 (latest)
RefSeq assembly accession:
GCF_000970435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LAJF01
Assembly method:
SPAdes v. 3.5.0
Expected final version:
yes
Genome coverage:
185.0x
Sequencing technology:
Illumina MiSeq

IDs: 321271 [UID] 1724208 [GenBank] 1724988 [RefSeq]

See Genome Information for Devosia limi

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/24/2015 15:33:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10 (rev. 462191)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,276
CDS::3,957
Pseudo Genes::267
rRNAs::5 ( 5S, 16S, 23S )
tRNAs::46
ncRNA::1
Frameshifted Genes::26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,474,336
Total ungapped length4,474,336
Number of contigs158
Contig N50131,891
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)158

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,474,3361584,474,336131,89100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Devosia limi DSM 17137Devosia limi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900128975.1Devosia limi DSM 17137type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900128975.1Devosia limitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9995.7199.66
Best-match type99.9995.7199.66

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna