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Source database (GenBank or RefSeq) File type

ASM96837v1

Organism name:: Clostridium scatologenes (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC 25775
BioSample:: SAMN02721231
BioProject:: PRJNA265889
Submitter:: Nanjing Tech University
Date:: 2015/04/02
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000968375.1 (latest)
RefSeq assembly accession:: GCF_000968375.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.7
Genome coverage:: 21
Sequencing technology:: 454

IDs: 319921 [UID] 1719478 [GenBank] 1721598 [RefSeq]

See Genome Information for Clostridium scatologenes

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000968375.1	=	GCF_000968375.1	ASM96837v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::04/13/2023 02:23:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,305
CDSs (total)::5,209
Genes (coding)::5,140
CDSs (with protein)::5,140
Genes (RNA)::96
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::64
ncRNAs::5
Pseudo Genes (total)::69
CDSs (without protein)::69
Pseudo Genes (ambiguous residues)::0 of 69
Pseudo Genes (frameshifted)::29 of 69
Pseudo Genes (incomplete)::35 of 69
Pseudo Genes (internal stop)::12 of 69
Pseudo Genes (multiple problems)::5 of 69
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,749,410
Total ungapped length	5,749,410
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	96.34	84.30	85.10

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ASM96837v1

See Genome Information for Clostridium scatologenes

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Average Nucleotide Identity (ANI) data

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