U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM96604v1

Organism name:
Enterobacter hormaechei subsp. steigerwaltii (CDC Enteric Group 75)
Taxonomy check:
OK
Infraspecific name:
Strain: CIDEIMsCOL6
BioSample:
SAMN03277193
BioProject:
PRJNA271006
Submitter:
JCVI
Date:
2015/03/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000966045.1 (latest)
RefSeq assembly accession:
GCF_000966045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JZKQ01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
230.97x
Sequencing technology:
Illumina HiSeq 2000

IDs: 318531 [UID] 1713938 [GenBank] 1717418 [RefSeq]

See Genome Information for Enterobacter hormaechei

There are 7132 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Enterobacter cloacae" to "Enterobacter hormaechei subsp. steigerwaltii" in June 2016.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/10/2015 14:11:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10 (rev. 461190)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,170
CDS::5,012
Pseudo Genes::81
rRNAs::4 ( 5S, 16S, 23S )
tRNAs::69
ncRNA::4
Frameshifted Genes::22
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,287,234
Total ungapped length5,287,234
Number of contigs155
Contig N50169,071
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)155

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,287,2341555,287,234169,07100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter hormaechei subsp. steigerwaltiiEnterobacter hormaechei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729725.1Enterobacter hormaechei subsp. steigerwaltiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729725.1Enterobacter hormaecheitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0682.9991.74
Best-match type99.0682.9991.74

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna