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ASM96357v1

  • Anomalous assembly.
Organism name:
Klebsiella michiganensis (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: RC10
BioSample:
SAMN03431443
BioProject:
PRJNA278789
Submitter:
China National Rice Research Institute
Date:
2015/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_000963575.1 (latest)
RefSeq assembly accession:
GCF_000963575.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis v. 2.2.1
Sequencing technology:
PacBio

IDs: 317131 [UID] 1710308 [GenBank] 1712778 [RefSeq]

See Genome Information for Klebsiella michiganensis

There are 529 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA is available from State Key Lab for Rice Biology, China National Rice Research Institute.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/19/2015 13:00:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10 (rev. 461190)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,738
CDS::4,536
Pseudo Genes::94
rRNAs::24 ( 5S, 16S, 23S )
tRNAs::83
ncRNA::1
Frameshifted Genes::29
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,107,633
Total ungapped length5,107,633
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000963585.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011077.1=NZ_CP011077.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,107,633

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella michiganensisKlebsiella michiganensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002925905.1Klebsiella michiganensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001571265.1Cedecea neterisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type82.4218.0014.84
Best-match type91.8882.4680.94

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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