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ASM96119v1

Organism name:
Xanthomonas citri pv. citri (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Pathovar: citri
Infraspecific name:
Strain: NT17
BioSample:
SAMN02911844
BioProject:
PRJNA255042
Submitter:
Citrus Research and Education center, Univerisity of Florida
Date:
2015/03/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000961195.1 (latest)
RefSeq assembly accession:
GCF_000961195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Bio v. 6.0
Reference guided assembly:
AE008923.1
Sequencing technology:
Illumina CLC

IDs: 315911 [UID] 1704748 [GenBank] 1709328 [RefSeq]

See Genome Information for Xanthomonas citri

There are 930 assemblies for this organism

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History (Show revision history)

Comment

Source bacteria/DNA available from Dr. Nian Wang, Citrus Research and Education Center, University of Florida (nianwang@ufl.edu)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000961195.1-RS_2024_05_05
Annotation Date::05/05/2024 15:20:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,545
CDSs (total)::4,446
Genes (coding)::4,261
CDSs (with protein)::4,261
Genes (RNA)::99
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::53
ncRNAs::40
Pseudo Genes (total)::185
CDSs (without protein)::185
Pseudo Genes (ambiguous residues)::0 of 185
Pseudo Genes (frameshifted)::109 of 185
Pseudo Genes (incomplete)::88 of 185
Pseudo Genes (internal stop)::27 of 185
Pseudo Genes (multiple problems)::35 of 185
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,269,254
Total ungapped length5,269,254
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000961205.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP008995.1=NZ_CP008995.1
Plasmid pXAC33CP008993.1=NZ_CP008993.1
Plasmid pXAC64CP008994.1=NZ_CP008994.1

Assembly statistics

MoleculeTotal
Length
All5,269,254
Chromosome 5,175,558
Plasmid pXAC3328,776
Plasmid pXAC6464,920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xanthomonas citri pv. citriXanthomonas citri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_963669775.1Xanthomonas citri pv. citrisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_963669775.1Xanthomonas citrisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9897.4499.21
Best-match type99.9897.4499.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna