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assembly_v1

Organism name:
Desulfitobacterium hafniense (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: PCE-S
BioSample:
SAMEA2636342
BioProject:
PRJEB6708
Submitter:
WUR
Date:
2014/10/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000944695.1 (latest)
RefSeq assembly accession:
GCF_000944695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 306291 [UID] 1663558 [GenBank] 25919998 [RefSeq]

See Genome Information for Desulfitobacterium hafniense

There are 11 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/21/2023 13:01:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,534
CDSs (total)::5,446
Genes (coding)::5,329
CDSs (with protein)::5,329
Genes (RNA)::88
rRNAs::6, 5, 7 (5S, 16S, 23S)
complete rRNAs::6, 1 (5S, 16S)
partial rRNAs::4, 7 (16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::117
CDSs (without protein)::117
Pseudo Genes (ambiguous residues)::0 of 117
Pseudo Genes (frameshifted)::20 of 117
Pseudo Genes (incomplete)::97 of 117
Pseudo Genes (internal stop)::13 of 117
Pseudo Genes (multiple problems)::10 of 117
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,666,696
Total ungapped length5,658,619
Number of contigs101
Contig N50122,895
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)24

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,666,6961015,658,619122,895770

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfitobacterium hafnienseDesulfitobacterium hafniense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000021925.1Desulfitobacterium hafniense DCB-2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000021925.1Desulfitobacterium hafniensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1580.2786.04
Best-match type98.1580.2786.04

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna