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ASM93144v1

Organism name:
Streptomyces cyaneogriseus subsp. noncyanogenus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NMWT 1
BioSample:
SAMN03329629
BioProject:
PRJNA274645
Submitter:
Northeast Agricultural University
Date:
2015/02/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000931445.1 (latest)
RefSeq assembly accession:
GCF_000931445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2
Genome coverage:
240x
Sequencing technology:
Illumina Miseq and Hiseq2000

IDs: 299731 [UID] 1635988 [GenBank] 1659638 [RefSeq]

See Genome Information for Streptomyces cyaneogriseus

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/20/2022 04:17:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,652
CDSs (total)::6,562
Genes (coding)::6,295
CDSs (with protein)::6,295
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::267
CDSs (without protein)::267
Pseudo Genes (ambiguous residues)::0 of 267
Pseudo Genes (frameshifted)::59 of 267
Pseudo Genes (incomplete)::246 of 267
Pseudo Genes (internal stop)::21 of 267
Pseudo Genes (multiple problems)::55 of 267
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,762,396
Total ungapped length7,762,396
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000931455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010849.1=NZ_CP010849.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,762,396

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces cyaneogriseus subsp. noncyanogenusStreptomyces cyaneogriseus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000696595.1Streptomyces leeuwenhoekiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.8381.2880.49

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
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