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ASM83486v1

Organism name:
Yersinia rochesterensis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Y231
BioSample:
SAMN03202900
BioProject:
PRJNA240099
Submitter:
Los Alamos National Laboratory
Date:
2015/02/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000834865.1 (latest)
RefSeq assembly accession:
GCF_000834865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24; HGAP v. 2.2.0
Genome coverage:
554x
Sequencing technology:
Illumina; PacBio; 454

IDs: 251521 [UID] 1527298 [GenBank] 1528808 [RefSeq]

See Genome Information for Yersinia rochesterensis

There are 13 assemblies for this organism

See more

History (Show revision history)

Comment

The DNA was obtained from USAMRIID
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/03/2024 03:21:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,082
CDSs (total)::3,964
Genes (coding)::3,894
CDSs (with protein)::3,894
Genes (RNA)::118
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::81
ncRNAs::15
Pseudo Genes (total)::70
CDSs (without protein)::70
Pseudo Genes (ambiguous residues)::0 of 70
Pseudo Genes (frameshifted)::31 of 70
Pseudo Genes (incomplete)::51 of 70
Pseudo Genes (internal stop)::14 of 70
Pseudo Genes (multiple problems)::21 of 70
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,496,569
Total ungapped length4,496,569
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000834875.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009997.1=NZ_CP009997.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,496,569

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia rochesterensisYersinia rochesterensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003600645.1Yersinia rochesterensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003600645.1Yersinia rochesterensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6992.1793.17
Best-match type99.6992.1793.17

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna