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ASM82905v1

Organism name:
Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 393
BioSample:
SAMD00061035
BioProject:
PRJDB480
Submitter:
Kyushu University
Date:
2013/08/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000829055.1 (latest)
RefSeq assembly accession:
GCF_000829055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
phrap v. 0.990329
Genome coverage:
5.9x
Sequencing technology:
3730xl

IDs: 248201 [UID] 1504838 [GenBank] 1507508 [RefSeq]

See Genome Information for Lacticaseibacillus casei

There are 34 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/20/2020 09:37:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,863
CDSs (total)::2,786
Genes (coding)::2,585
CDSs (with protein)::2,585
Genes (RNA)::77
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::201
CDSs (without protein)::201
Pseudo Genes (ambiguous residues)::0 of 201
Pseudo Genes (frameshifted)::79 of 201
Pseudo Genes (incomplete)::91 of 201
Pseudo Genes (internal stop)::45 of 201
Pseudo Genes (multiple problems)::14 of 201
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,952,961
Total ungapped length2,952,961
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000829065.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP012544.1=NZ_AP012544.1
Plasmid pLBCZ-1AP012545.1=NZ_AP012545.1
Plasmid pLBCZ-2AP012546.1=NZ_AP012546.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,952,96132,952,9612,924,92900
Chromosome 2,924,92912,924,9292,924,92900
Plasmid pLBCZ-126,706126,70626,70600
Plasmid pLBCZ-21,32611,3261,32600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393Lacticaseibacillus casei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000615205.1Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000615205.1Lacticaseibacillus caseisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9893.6599.48
Best-match type99.9893.6599.48

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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