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ASM82905v1

Organism name:
Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 (firmicutes)
Infraspecific name:
Strain: ATCC 393
BioSample:
SAMD00061035
BioProject:
PRJDB480
Submitter:
Kyushu University
Date:
2013/08/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000829055.1 (latest)
RefSeq assembly accession:
GCF_000829055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
phrap v. 0.990329
Genome coverage:
5.9x
Sequencing technology:
3730xl

IDs: 248201 [UID] 1504838 [GenBank] 1507508 [RefSeq]

See Genome Information for Lactobacillus casei

There are 26 assemblies for this organism

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History (Show revision history)

Comment

##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 04/01/2020 20:14:36
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) :: 2,922
CDSs ... (total) :: 2,845
Genes (coding) :: 2,606
CDSs (with protein) :: 2,606
Genes (RNA) :: 77
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 59
ncRNAs :: 3
Pseudo Genes (total) :: 239
CDSs (without protein) :: 239
Pseudo Genes (ambiguous residues) :: 0 of 239
Pseudo Genes (frameshifted) :: 105 of 239
Pseudo Genes (incomplete) :: 113 of 239
Pseudo Genes (internal stop) :: 48 of 239
Pseudo Genes (multiple problems) :: 27 of 239
##Genome-Annotation-Data-END##  more

Global statistics

Total sequence length2,952,961
Total ungapped length2,952,961
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000829065.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP012544.1=NZ_AP012544.1
Plasmid pLBCZ-1AP012545.1=NZ_AP012545.1
Plasmid pLBCZ-2AP012546.1=NZ_AP012546.1

Assembly statistics

MoleculeTotal
Length
All2,952,961
Chromosome 2,924,929
Plasmid pLBCZ-126,706
Plasmid pLBCZ-21,326
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