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SarSca1.0

Organism name:
Sarcoptes scabiei (mites & ticks)
Isolate:
Arlian Lab
BioSample:
SAMN03218485
BioProject:
PRJNA268368
Submitter:
Wright State University
Date:
2015/02/10
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000828355.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JXLN01
Assembly method:
Minia v. 1.6088; SSPACE Standard v. 3.0
Expected final version:
no
Genome coverage:
174.0x
Sequencing technology:
Illumina

IDs: 251951 [UID] 1529138 [GenBank]

See Genome Information for Sarcoptes scabiei

History (Show revision history)

Comment

Annotation was added to the sequences in October 2015.

Global statistics

Total sequence length56,262,437
Total ungapped length56,243,862
Gaps between scaffolds0
Number of scaffolds18,860
Scaffold N5011,557
Scaffold L50972
Number of contigs19,811
Contig N5011,197
Contig L501,019
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)18,860

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_000828415.1)

This assembly-unit does not have any assembled chromosomes or linkage groups. Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All56,248,77018,85956,230,19511,5579510
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT13,667113,66713,66700
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