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Aradu1.0

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Arachis duranensis (eudicots)
Infraspecific name:
Cultivar: V14167
BioSample:
SAMN02982871
BioProject:
PRJNA258023
Submitter:
The International Peanut Genome Initiative
Date:
2015/01/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000817695.1 (suppressed)
RefSeq assembly accession:
GCF_000817695.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQIN01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 247131 [UID] 1487808 [GenBank] 3134148 [RefSeq]

See Genome Information for Arachis duranensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length1,068,348,566
Total assembly gap length127,683,950
Gaps between scaffolds1,683
Number of scaffolds3,190
Scaffold N501,068,268
Scaffold L50270
Number of contigs130,836
Contig N5024,685
Contig L5010,971
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)3,190

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000817705.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A01CM003088.1=NC_029772.10
Chromosome A02CM003089.1=NC_029773.10
Chromosome A03CM003090.1=NC_029774.10
Chromosome A04CM003091.1=NC_029775.10
Chromosome A05CM003092.1=NC_029776.10
Chromosome A06CM003093.1=NC_029777.10
Chromosome A07CM003094.1=NC_029778.10
Chromosome A08CM003095.1=NC_029779.10
Chromosome A09CM003096.1=NC_029780.10
Chromosome A10CM003097.1=NC_029781.10
unplacedn/an/an/a1,497

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,068,348,5663,190940,664,6161,068,268127,6461,683
Chromosome A01106,015,83710497,407,0312,290,86810,969103
Chromosome A0292,627,92420280,500,824899,62511,757201
Chromosome A03133,136,946195118,740,5591,198,99715,304194
Chromosome A04121,180,382241105,980,893742,72715,279240
Chromosome A05108,284,73717895,992,0341,228,89812,719177
Chromosome A06110,733,11720597,422,533976,85513,439204
Chromosome A0777,948,62412069,172,2881,390,3199,195119
Chromosome A0848,937,5345445,823,2671,719,8234,09653
Chromosome A09118,999,574170107,178,4601,155,80813,456169
Chromosome A10107,255,53622493,307,501952,59214,035223
unplaced43,228,3551,49729,139,22641,2917,3970
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