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ASM80739v3

  • Anomalous assembly.
Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 32192
BioSample:
SAMN03067420
BioProject:
PRJNA259789
Submitter:
JCVI
Date:
2015/02/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000807395.3 (latest)
RefSeq assembly accession:
GCF_000807395.2 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2
Expected final version:
yes
Genome coverage:
5.63x
Sequencing technology:
Pacbio RS

IDs: 271891 [UID] 1571568 [GenBank] 1661908 [RefSeq]

See Genome Information for Klebsiella pneumoniae

There are 65159 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/23/2014 11:58:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 454913)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,401
CDS::5,215
Pseudo Genes::64
rRNAs::28 ( 5S, 16S, 23S )
tRNAs::89
ncRNA::5
Frameshifted Genes::49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,620,801
Total ungapped length5,620,801
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000807435.3)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010361.1=NZ_CP010361.1
Plasmid unnamed_1CP010574.1=NZ_CP010574.1
Plasmid unnamed_2CP010575.1=NZ_CP010575.1
Plasmid unnamed_3CP010576.1=NZ_CP010576.1

Assembly statistics

MoleculeTotal
Length
All5,620,801
Chromosome 5,344,430
Plasmid unnamed_1167,664
Plasmid unnamed_272,864
Plasmid unnamed_335,843

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9696.9095.13
Best-match type99.9696.9095.13

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna