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ASM80729v1

Organism name:
Borrelia miyamotoi (spirochetes)
Taxonomy check:
OK
Infraspecific name:
Strain: CT14D4
BioSample:
SAMN03255733
BioProject:
PRJNA269604
Submitter:
University of California Irvine
Date:
2014/12/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000807295.1 (latest)
RefSeq assembly accession:
GCF_000807295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC Assembly Cell v. v. 7.5.1
Reference guided assembly:
CP006647
Genome coverage:
1000X
Sequencing technology:
IonTorrent

IDs: 237201 [UID] 1428338 [GenBank] 1645008 [RefSeq]

See Genome Information for Borrelia miyamotoi

There are 46 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/16/2023 00:44:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::870
CDSs (total)::833
Genes (coding)::817
CDSs (with protein)::817
Genes (RNA)::37
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::16
CDSs (without protein)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::13 of 16
Pseudo Genes (incomplete)::2 of 16
Pseudo Genes (internal stop)::6 of 16
Pseudo Genes (multiple problems)::5 of 16
##Genome-Annotation-Data-END##

Global statistics

Total sequence length907,293
Total ungapped length907,293
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000807305.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010308.1=NZ_CP010308.1

Assembly statistics

MoleculeTotal
Length
Chromosome 907,293

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Borrelia miyamotoiBorrelia miyamotoi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019668505.1Borrelia miyamotoisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019668505.1Borrelia miyamotoisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7899.7299.85
Best-match type97.7899.7299.85

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna