Format

Download Assemblies

Send to:

Choose Destination

ASM80636v1

Organism name:
Fopius arisanus (wasps, ants, and bees)
Infraspecific name:
Strain: USDA-PBARC FA_bdor
Sex:
male
BioSample:
SAMN03083650
BioProject:
PRJNA258104
Submitter:
USDA ARS
Date:
2014/12/23
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000806365.1 (latest)
RefSeq assembly accession:
GCF_000806365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JRKH01
Assembly method:
AllPaths v. 49856
Expected final version:
no
Genome coverage:
137.6x
Sequencing technology:
Illumina HiSeq

IDs: 237211 [UID] 1428348 [GenBank] 1527148 [RefSeq]

See Genome Information for Fopius arisanus

History (Show revision history)

Comment

All wasps used in library construction were derived from an unmated female. They are all haploid and are haplodiploid siblings of each other. A short insert library was constructed from a single wasp (USDA ID 24.2). A 3 kb ... mate-paired library was constructed from a pool of individuals that are full siblings of the single wasp (USDA ID 24pool). An 8 kb mate-paired library was constructed from individuals that were half siblings of the single wasp (USDA ID 12pool). Sequencing and DNA extractions were done separately for each library then the reads from the three libraries were pooled to generate the assembly.  more

Global statistics

Total sequence length153,631,861
Total ungapped length140,978,447
Gaps between scaffolds0
Number of scaffolds1,042
Scaffold N50978,588
Scaffold L5049
Number of contigs8,510
Contig N5051,867
Contig L50726
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)8,510

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced153,631,8611,042140,978,447978,5887,4680
Support Center