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ASM80072v2

Organism name:
Edwardsiella sp. EA181011 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: EA181011
BioSample:
SAMN03246002
BioProject:
PRJNA268888
Submitter:
LSU
Date:
2015/06/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000800725.2 (latest)
RefSeq assembly accession:
GCF_000800725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
whole genome shotgun assembler (Celera) v. 8.2beta
Genome coverage:
24 (PacBio), 16 (Ion Torrent)
Sequencing technology:
Illumina; IonTorrent

IDs: 429041 [UID] 2024648 [GenBank] 2028148 [RefSeq]

See Genome Information for Edwardsiella sp. EA181011

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Matt Griffin, matt.griffin@msstate.edu

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/12/2023 01:50:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,643
CDSs (total)::3,516
Genes (coding)::3,302
CDSs (with protein)::3,302
Genes (RNA)::127
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::96
ncRNAs::6
Pseudo Genes (total)::214
CDSs (without protein)::214
Pseudo Genes (ambiguous residues)::0 of 214
Pseudo Genes (frameshifted)::172 of 214
Pseudo Genes (incomplete)::62 of 214
Pseudo Genes (internal stop)::35 of 214
Pseudo Genes (multiple problems)::38 of 214
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,934,167
Total ungapped length3,934,167
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000800735.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011364.1=NZ_CP011364.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,934,167

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Edwardsiella sp. EA181011Edwardsiella sp. EA181011

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000264765.2Edwardsiella anguillarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.7097.3688.47

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna