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ASM80039v1

Organism name:
Deinococcus radiopugnans (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DY59
BioSample:
SAMN03218061
BioProject:
PRJNA268296
Submitter:
Kyungpook National University
Date:
2014/12/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_000800395.1 (latest)
RefSeq assembly accession:
GCF_000800395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBio SMRT Analysis v. 2.3.0
Sequencing technology:
PacBio

IDs: 233751 [UID] 1419568 [GenBank] 1489508 [RefSeq]

See Genome Information for Deinococcus radiopugnans

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000800395.1-RS_2024_03_28
Annotation Date::03/28/2024 01:40:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,384
CDSs (total)::3,328
Genes (coding)::3,308
CDSs (with protein)::3,308
Genes (RNA)::56
rRNAs::2, 3, 2 (5S, 16S, 23S)
complete rRNAs::2, 3, 2 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::10 of 20
Pseudo Genes (incomplete)::10 of 20
Pseudo Genes (internal stop)::3 of 20
Pseudo Genes (multiple problems)::3 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,531,443
Total ungapped length3,531,443
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000800405.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010028.1=NZ_CP010028.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,531,443

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deinococcus radiopugnansDeinococcus radiopugnans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006335125.1Deinococcus radiopugnans ATCC 19172type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006335125.1Deinococcus radiopugnanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7488.1271.92
Best-match type97.7488.1271.92

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna