Format

Download Assemblies

Send to:

Choose Destination

Charlie1.0

Organism name:
Nasalis larvatus (proboscis monkey)
Isolate:
Charlie
Sex:
male
BioSample:
SAMN02689222
BioProject:
PRJNA241312
Submitter:
Proboscis Monkey Functional Genome Consortium
Date:
2014/11/10
Synonyms:
nasLar1
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000772465.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JMHX01
Assembly method:
phredPhrap v. 1.080812
Expected final version:
yes
Reference guided assembly:
GCF_000002255.3; Macaca mulatta NCBI build 1.2.
Genome coverage:
290.0x
Sequencing technology:
454; Illumina HiSeq

IDs: 221311 [UID] 1374628 [GenBank]

See Genome Information for Nasalis larvatus

History (Show revision history)

Comment

All of the assembly_gaps in this assembly were included with linkage evidence align_xgenus although for 30% of them at unknown locations the evidence was paired-ends.

This assembly, Charlie1.0, is a reference-guided assembly that was created by alignment to GCF_000002255.3, a ... female macaque (Macaca mulatta) genome. Therefore, this assembly includes 20 autosomal chromosomes, rather than the expected 23, since the Macaca mulatta genome has 20 autosomal chromosomes. Chromosome naming in Charlie1.0 is based upon alignment to the chromosomes of the Macaca mulatta genome so they are named "align_Mm1"- "align_Mm20" to indicate that they are the product of alignment to the chromosomes of a different organism and are not necessarily chromosomes 1-20 of the Nasalis larvatus genome.  more

Global statistics

Total sequence length3,011,966,170
Total assembly gap length614,115,694
Gaps between scaffolds0
Number of scaffolds319,549
Scaffold N50137,426,304
Scaffold L509
Number of contigs553,412
Contig N5013,295
Contig L5048,052
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)319,549

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000772475.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome align_Mm1CM002998.1n/an/a0
Chromosome align_Mm10CM002999.1n/an/a0
Chromosome align_Mm11CM003000.1n/an/a0
Chromosome align_Mm12CM003001.1n/an/a0
Chromosome align_Mm13CM003002.1n/an/a0
Chromosome align_Mm14CM003003.1n/an/a0
Chromosome align_Mm15CM003004.1n/an/a0
Chromosome align_Mm16CM003005.1n/an/a0
Chromosome align_Mm17CM003006.1n/an/a0
Chromosome align_Mm18CM003007.1n/an/a0
Chromosome align_Mm19CM003008.1n/an/a0
Chromosome align_Mm2CM003009.1n/an/a0
Chromosome align_Mm20CM003010.1n/an/a0
Chromosome align_Mm3CM003011.1n/an/a0
Chromosome align_Mm4CM003012.1n/an/a0
Chromosome align_Mm5CM003013.1n/an/a0
Chromosome align_Mm6CM003014.1n/an/a0
Chromosome align_Mm7CM003015.1n/an/a0
Chromosome align_Mm8CM003016.1n/an/a0
Chromosome align_Mm9CM003017.1n/an/a0
Chromosome align_MmXCM003018.1n/an/a0
unplacedn/an/an/a319,528

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,011,966,170319,5492,397,850,476137,426,304233,8630
Chromosome align_Mm1215,897,9651167,502,436215,897,96521,3620
Chromosome align_Mm1086,128,551165,260,91086,128,5519,6580
Chromosome align_Mm11123,372,7831101,122,701123,372,78311,9400
Chromosome align_Mm1297,321,604185,735,62797,321,6047,5820
Chromosome align_Mm13126,811,2331102,868,786126,811,23310,6590
Chromosome align_Mm14126,788,305192,119,802126,788,30510,7280
Chromosome align_Mm1599,894,491181,602,62299,894,4919,0290
Chromosome align_Mm1670,300,957149,763,35670,300,9579,3180
Chromosome align_Mm1788,628,999172,997,10888,628,9996,6890
Chromosome align_Mm1867,975,966154,355,13367,975,9664,5720
Chromosome align_Mm1958,747,148126,256,39258,747,1487,3510
Chromosome align_Mm2181,502,8961145,851,734181,502,89614,9890
Chromosome align_Mm2081,577,475152,176,52781,577,4757,5130
Chromosome align_Mm3179,790,0061137,547,509179,790,00614,2440
Chromosome align_Mm4160,576,332198,027,814160,576,33210,5360
Chromosome align_Mm5174,288,6231137,342,380174,288,62313,2760
Chromosome align_Mm6170,588,0181135,631,928170,588,01813,8480
Chromosome align_Mm7153,844,1931127,179,426153,844,19314,2030
Chromosome align_Mm8137,426,3041112,930,880137,426,30410,4930
Chromosome align_Mm9124,503,471194,786,448124,503,47110,2670
Chromosome align_MmX146,407,0081117,197,115146,407,00815,6060
unplaced339,593,842319,528339,593,8421,26900
Support Center