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ASM77019v1

Organism name:
Candidatus Mycoplasma girerdii (mycoplasmas)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: VCU_M1
BioSample:
SAMN02795945
BioProject:
PRJNA196996
Submitter:
Virginia Commonwealth University
Date:
2014/10/31
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_000770195.1 (latest)
RefSeq assembly accession:
GCF_000770195.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
60x
Sequencing technology:
454 GS FLX Titanium; AB3730, AB3130

IDs: 218791 [UID] 1366648 [GenBank] 1516198 [RefSeq]

See Genome Information for Candidatus Mycoplasma girerdii

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Limited amounts of source DNA may be available through the Research Alliance for Microbiome Science (RAMS) Registry at VCU (ramsregistry.vcu.edu). Please contact Gregory A. Buck (gabuck@vcu.edu) or Jennifer M. Fettweis (fettweisjm@vcu.edu) for additional information.

Global statistics

Total sequence length618,983
Total ungapped length618,983
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000770205.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP007711.1=NZ_CP007711.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 618,9831618,983618,98300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Mycoplasma girerdiiCandidatus Mycoplasma girerdii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000227355.2Mycoplasma iowaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.760.510.26

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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