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Vi_pacos_V1.0

Organism name:
Vicugna pacos huacaya (alpaca)
Sex:
female
BioSample:
SAMN02996813
BioProject:
PRJNA233565
Submitter:
BGI-Shenzhen
Date:
2015/02/11
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000767525.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JEMW01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
72.5x
Sequencing technology:
Illumina HiSeq2000

IDs: 252181 [UID] 1530408 [GenBank]

See Genome Information for Vicugna pacos

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,013,701,362
Total ungapped length2,001,161,349
Gaps between scaffolds0
Number of scaffolds52,275
Scaffold N505,303,709
Scaffold L50107
Number of contigs75,733
Contig N50213,649
Contig L502,602
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)75,733

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,013,701,36252,2752,001,161,3495,303,70923,4580
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