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ASM75947v1

Organism name:
Pantoea rwandensis (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ND04
BioSample:
SAMN03031199
BioProject:
PRJNA260768
Submitter:
UNIVERSITY OF MALAYA
Date:
2014/09/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000759475.1 (latest)
RefSeq assembly accession:
GCF_000759475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 1
Genome coverage:
47.13x
Sequencing technology:
PacBio RSII

IDs: 213441 [UID] 1315448 [GenBank] 1514548 [RefSeq]

See Genome Information for Pantoea rwandensis

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Bacteria is available from Microbiome 1, Level 1, High Impact Research (HIR) Building, University of Malaya, Lembah Pantai, 50603 ... Kuala Lumpur, Malaysia.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/06/2022 01:34:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,037
CDSs (total)::3,931
Genes (coding)::3,887
CDSs (with protein)::3,887
Genes (RNA)::106
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::79
ncRNAs::5
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::22 of 44
Pseudo Genes (incomplete)::18 of 44
Pseudo Genes (internal stop)::10 of 44
Pseudo Genes (multiple problems)::6 of 44
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,327,607
Total ungapped length4,327,607
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000759495.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009454.1=NZ_CP009454.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,327,607

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pantoea rwandensisPantoea rwandensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002095475.1Pantoea rwandensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002095465.1Pantoea rodasiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type87.1083.3862.48
Best-match type89.2786.1564.82

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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