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ASM75832v1

Organism name:
Cedecea neteri (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ND14a
BioSample:
SAMN03066974
BioProject:
PRJNA260882
Submitter:
University of Malaya
Date:
2014/09/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000758325.1 (latest)
RefSeq assembly accession:
GCF_000758325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 1
Genome coverage:
55.36x
Sequencing technology:
PacBio RSII

IDs: 212861 [UID] 1304438 [GenBank] 1489188 [RefSeq]

See Genome Information for Cedecea neteri

There are 9 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/10/2024 01:22:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,405
CDSs (total)::4,292
Genes (coding)::4,240
CDSs (with protein)::4,240
Genes (RNA)::113
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::81
ncRNAs::10
Pseudo Genes (total)::52
CDSs (without protein)::52
Pseudo Genes (ambiguous residues)::0 of 52
Pseudo Genes (frameshifted)::34 of 52
Pseudo Genes (incomplete)::22 of 52
Pseudo Genes (internal stop)::5 of 52
Pseudo Genes (multiple problems)::8 of 52
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,659,311
Total ungapped length4,659,311
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000758335.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009459.1=NZ_CP009459.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,659,311

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Cedecea neteriCedecea neteri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001571265.1Cedecea neteri NBRC 105707 = ATCC 33855suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001571265.1Cedecea neterisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.9188.1478.93
Best-match type91.9188.1478.93

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna