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ASM74279v1

Organism name:
Glaesserella parasuis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KL0318
BioSample:
SAMN02996424
BioProject:
PRJNA258333
Submitter:
Bioinformatics Center, Nanjing Agricultural University
Date:
2014/08/21
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000742795.1 (latest)
RefSeq assembly accession:
GCF_000742795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.7
Genome coverage:
58x
Sequencing technology:
454

IDs: 204951 [UID] 1190988 [GenBank] 1646498 [RefSeq]

See Genome Information for Glaesserella parasuis

There are 805 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria/DNA is available from Li Pengpeng (lipp0514@gmail.com)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/25/2024 01:04:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,295
CDSs (total)::2,215
Genes (coding)::2,079
CDSs (with protein)::2,079
Genes (RNA)::80
rRNAs::8, 6, 6 (5S, 16S, 23S)
complete rRNAs::8, 6, 6 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::136
CDSs (without protein)::136
Pseudo Genes (ambiguous residues)::0 of 136
Pseudo Genes (frameshifted)::71 of 136
Pseudo Genes (incomplete)::77 of 136
Pseudo Genes (internal stop)::28 of 136
Pseudo Genes (multiple problems)::34 of 136
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,280,878
Total ungapped length2,280,878
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000742805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009237.1=NZ_CP009237.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,280,878

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Glaesserella parasuisGlaesserella parasuis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900450925.1Glaesserella parasuistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900450925.1Glaesserella parasuistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1186.1079.87
Best-match type97.1186.1079.87

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna