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ASM73068v1

Organism name:
Rodentibacter pneumotropicus (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 35149
BioSample:
SAMD00018573
BioProject:
PRJDB2951
Submitter:
Juntendo University
Date:
2014/07/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000730685.1 (latest)
RefSeq assembly accession:
GCF_000730685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBIX01
Assembly method:
SMRT Analysis v. 2.1.1
Genome coverage:
200x
Sequencing technology:
PacBio RSII

IDs: 198631 [UID] 1175118 [GenBank] 1703148 [RefSeq]

See Genome Information for Rodentibacter pneumotropicus

There are 33 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,434,546
Total ungapped length2,434,546
Number of contigs9
Contig N50814,831
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,434,54692,434,546814,83100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rodentibacter pneumotropicusRodentibacter pneumotropicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000379905.1Rodentibacter pneumotropicus DSM 21403type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000379905.1Rodentibacter pneumotropicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9992.6899.99
Best-match type99.9992.6899.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna