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ASM73016v2

Organism name:
Nitrospirillum amazonense CBAmc (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CBAmC
BioSample:
SAMN02689882
BioProject:
PRJNA232577
Submitter:
Embrapa
Date:
2017/06/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000730165.2 (latest)
RefSeq assembly accession:
GCF_000730165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Hierarchical Genome Assembly Process (HGAP) v. RS_HGAP_Assembly.3
Expected final version:
yes
Genome coverage:
171.0x
Sequencing technology:
PacBio; Illumina GAIIx

IDs: 1151021 [UID] 4674898 [GenBank] 4675968 [RefSeq]

See Genome Information for Nitrospirillum amazonense

Pathogen Detection Resources

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Centro de Recursos Biologicos Johanna Dobereiner, Embrapa Agrobiologia, Brazilian Agricultural Research Corporation (Embrapa).
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000730165.1-RS_2024_03_28
Annotation Date::03/28/2024 03:15:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,296
CDSs (total)::6,214
Genes (coding)::6,165
CDSs (with protein)::6,165
Genes (RNA)::82
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::10 of 49
Pseudo Genes (incomplete)::42 of 49
Pseudo Genes (internal stop)::2 of 49
Pseudo Genes (multiple problems)::5 of 49
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,382,386
Total ungapped length7,382,386
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000730195.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP022110.1=NZ_CP022110.1
Chromosome 2CP022111.1=NZ_CP022111.1
Chromosome 3CP022112.1=NZ_CP022112.1
Chromosome 4CP022113.1=NZ_CP022113.1

Assembly statistics

MoleculeTotal
Length
All7,382,386
Chromosome 12,945,703
Chromosome 22,007,914
Chromosome 31,603,407
Chromosome 4825,362

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospirillum amazonense CBAmcNitrospirillum amazonense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014205765.1Nitrospirillum iridistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.7360.4762.98

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna