U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM70674v1

Organism name:
Burkholderia thailandensis USAMRU Malaysia #20 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USAMRU Malaysia #20
BioSample:
SAMN02850988
BioProject:
PRJNA178714
Submitter:
Los Alamos National Laboratory
Date:
2014/06/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000706745.1 (latest)
RefSeq assembly accession:
GCF_000706745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6; Velvet v. 1.1.05; Allpaths v. 39750; parallel phrap v. SPS - 4.24
Genome coverage:
29x; 191x; 73x
Sequencing technology:
454pe; Illumina; PacBio

IDs: 186531 [UID] 1129818 [GenBank] 1511188 [RefSeq]

See Genome Information for Burkholderia thailandensis

There are 78 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Keim Group at NAU http://www.mggen.nau.edu/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/25/2024 01:29:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,918
CDSs (total)::5,844
Genes (coding)::5,642
CDSs (with protein)::5,642
Genes (RNA)::74
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::202
CDSs (without protein)::202
Pseudo Genes (ambiguous residues)::0 of 202
Pseudo Genes (frameshifted)::105 of 202
Pseudo Genes (incomplete)::140 of 202
Pseudo Genes (internal stop)::22 of 202
Pseudo Genes (multiple problems)::55 of 202
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,684,359
Total ungapped length6,684,359
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000706755.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP004383.1=NZ_CP004383.1
Chromosome 2CP004384.1=NZ_CP004384.1

Assembly statistics

MoleculeTotal
Length
All6,684,359
Chromosome 13,862,646
Chromosome 22,821,713

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia thailandensis USAMRU Malaysia #20Burkholderia thailandensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012365.1Burkholderia thailandensis E264type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012365.1Burkholderia thailandensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7896.9896.41
Best-match type99.7896.9896.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna