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FHM_SOAPdenovo

Organism name:
Pimephales promelas (fathead minnow)
BioSample:
SAMN02418978
BioProject:
PRJNA227290
Submitter:
DuPont
Date:
2014/06/10
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000700825.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JNCD01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
62.0x
Sequencing technology:
Illumina HiSeq; Illumina MiSeq

IDs: 183581 [UID] 1106128 [GenBank]

See Genome Information for Pimephales promelas

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length1,219,326,373
Total assembly gap length408,157,010
Gaps between scaffolds0
Number of scaffolds73,057
Scaffold N5060,380
Scaffold L505,505
Number of contigs215,176
Contig N507,468
Contig L5028,848
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)73,057

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,219,326,37373,057811,169,36360,380142,1190
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