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Apla_1.0

Organism name:
Agrilus planipennis (emerald ash borer)
Isolate:
EAB-ADULT
Sex:
female
BioSample:
SAMN02439909
BioProject:
PRJNA230921
Submitter:
The BCM-HGSC i5K pilot project
Date:
2016/04/05
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000699045.1 (replaced)
RefSeq assembly accession:
GCF_000699045.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JENH01
Assembly method:
AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2
Expected final version:
yes
Genome coverage:
124.7x
Sequencing technology:
Illumina

IDs: 183751 [UID] 1107798 [GenBank] 3457658 [RefSeq]

See Genome Information for Agrilus planipennis

History (Show revision history)

Comment

Bacteria available from None. Source DNA available from None.

Global statistics

Total sequence length353,562,607
Total ungapped length252,642,891
Gaps between scaffolds0
Number of scaffolds3,988
Scaffold N50910,924
Scaffold L50118
Number of contigs75,413
Contig N506,314
Contig L5011,164
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)75,413

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced353,546,6653,987252,626,949910,92471,4250
MoleculeTotal
Length
Mitochondrion MT15,942
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