Format

Send to:

Choose Destination

Download Assembly



Hhal_1.0

Organism name:
Halyomorpha halys (brown marmorated stink bug)
Isolate:
HHAL.00
Sex:
female
BioSample:
SAMN02737379
BioProject:
PRJNA168118
Submitter:
The i5k Initiative
Date:
2014/06/03
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000696795.1 (replaced)
RefSeq assembly accession:
GCF_000696795.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JMPT01
Assembly method:
AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2
Expected final version:
yes
Genome coverage:
113.7x
Sequencing technology:
Illumina

IDs: 182041 [UID] 1092688 [GenBank] 2391988 [RefSeq]

See Genome Information for Halyomorpha halys

History (Show revision history)

Global statistics

Total sequence length1,150,108,890
Total ungapped length1,000,816,594
Gaps between scaffolds0
Number of scaffolds12,168
Scaffold N50802,423
Scaffold L50417
Number of contigs132,308
Contig N5017,705
Contig L5015,635
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)132,308

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,150,092,37212,1671,000,800,076802,423120,1400
MoleculeTotal
Length
Mitochondrion MT16,518
Support Center