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Soap denovo 2.01

Organism name:
Vibrio fortis (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Dalian14
BioSample:
SAMN02666092
BioProject:
PRJNA238974
Submitter:
Dalian Ocean University
Date:
2014/05/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000695685.1 (latest)
RefSeq assembly accession:
GCF_000695685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JFFR01
Assembly method:
SOAPdenovo v. 2.01
Expected final version:
yes
Genome coverage:
180.0x
Sequencing technology:
Illumina HiSeq

IDs: 180541 [UID] 1078818 [GenBank] 1352038 [RefSeq]

See Genome Information for Vibrio fortis

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from: Yinan Wang, No. 52 Heishijiao Street, Dalian, Liaoning, China. Source DNA available from: Dalian Ocean University, College of Fisheries and Life Science, No. 52 Heishijiao Street, Dalian, Liaoning, China.
Annotation was added by the NCBI Prokaryotic Genome ... Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/03/2014 09:20:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.4 (rev. 428102)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,686
CDS::4,550
Pseudo Genes::58
rRNAs::7 ( 5S, 16S, 23S )
tRNAs::70
ncRNA::1
Frameshifted Genes::17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,286,006
Total ungapped length5,285,498
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50423,815
Scaffold L504
Number of contigs35
Contig N50423,815
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,286,006335,285,498423,81520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio fortisVibrio fortis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024347475.1Vibrio fortissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024347575.1Vibrio pelagiustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.6481.8981.95
Best-match type91.6473.5678.33

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna