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CLC Genomics workbench 5.0

Organism name:
Sphaerotilus natans subsp. natans DSM 6575 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 6575
BioSample:
SAMN02767310
BioProject:
PRJNA230544
Submitter:
Gwangju Institute of Science and Technology
Date:
2014/05/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000689195.1 (latest)
RefSeq assembly accession:
GCF_000689195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZRA01
Assembly method:
GS De Novo Assembler v. 5.0
Expected final version:
no
Genome coverage:
94.71x
Sequencing technology:
Illumina MiSeq

IDs: 177641 [UID] 1067678 [GenBank] 1446478 [RefSeq]

See Genome Information for Sphaerotilus natans

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,592,824
Total ungapped length4,592,824
Number of contigs188
Contig N5043,860
Contig L5034
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)188

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,592,8241884,592,82443,86000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphaerotilus natans subsp. natans DSM 6575Sphaerotilus natans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900156335.1Sphaerotilus natanstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900156335.1Sphaerotilus natanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.5598.78
Best-match type99.9899.5598.78

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna