U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM68845v1

Organism name:
Pseudacidobacterium ailaaui (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PMMR2
BioSample:
SAMN02743914
BioProject:
PRJNA214267
Submitter:
DOE Joint Genome Institute
Date:
2014/04/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000688455.1 (latest)
RefSeq assembly accession:
GCF_000688455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JIAL01
Assembly method:
HGAP v. 2.0.1
Genome coverage:
Unknown
Sequencing technology:
PacBio RS; Illumina HiSeq 2000

IDs: 177261 [UID] 1066918 [GenBank] 1106958 [RefSeq]

See Genome Information for Pseudacidobacterium ailaaui

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1016205
Source DNA and Organism available from Gary King (gkingme@gmail.com)
Source DNA available from Gary King (gkingme@gmail.com)
Organism available from Gary King (gkingme@gmail.com)
Contacts: Gary King (gkingme@gmail.com)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::HGAP v. 2.0.1
investigation_type::bacteria_archaea
project_name::Acidobacterium sp. PMMR2
sequencing_meth::WGS
GOLD Stamp ID::Gi22671
Gene Calling Method::Prodigal 2.5
##MIGS-Data-END##

Global statistics

Total sequence length3,686,523
Total ungapped length3,686,523
Number of contigs1
Contig N503,686,523
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,686,52313,686,5233,686,52300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudacidobacterium ailaauiPseudacidobacterium ailaaui

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025685395.1Terriglobus tenaxtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.310.330.28

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected