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ASM63241v1

Organism name:
Klebsiella michiganensis HKOPL1 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HKOPL1
BioSample:
SAMN03081460
BioProject:
PRJNA194061
Submitter:
Bioinformatics Center,Nanjing Agricultural University
Date:
2014/04/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000632415.1 (latest)
RefSeq assembly accession:
GCF_000632415.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.7; Laser Gene v. 7.0
Genome coverage:
23x
Sequencing technology:
Sanger dideoxy sequencing; 454

IDs: 148641 [UID] 1007588 [GenBank] 1646318 [RefSeq]

See Genome Information for Klebsiella michiganensis

There are 1011 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Klebsiella oxytoca" to "Klebsiella michiganensis" in July 2016.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 05:40:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,610
CDSs (total)::5,491
Genes (coding)::5,229
CDSs (with protein)::5,229
Genes (RNA)::119
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::86
ncRNAs::8
Pseudo Genes (total)::262
CDSs (without protein)::262
Pseudo Genes (ambiguous residues)::0 of 262
Pseudo Genes (frameshifted)::190 of 262
Pseudo Genes (incomplete)::84 of 262
Pseudo Genes (internal stop)::21 of 262
Pseudo Genes (multiple problems)::28 of 262
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000632415.1
Current Name::Klebsiella michiganensis
Previous Name::Klebsiella oxytoca
Date Updated::2016-07-08
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. PROXYTYPE genome for current name
A1 Genome (subject)::GCA_000633235.1
A1 Name::Klebsiella michiganensis
A1 ANI::98.90731%
A1 Query Coverage::90%
A1 Subject Coverage::91%
Analysis 2 (A2)::Query vs. PROXYTYPE genome for previous name
A2 Genome (subject)::GCA_000507385.1
A2 Name::Klebsiella oxytoca
A2 ANI::92.59859%
A2 Query Coverage::83%
A2 Subject Coverage::84%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length5,914,407
Total ungapped length5,914,407
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000632425.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004887.1=NZ_CP004887.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,914,407

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella michiganensis HKOPL1Klebsiella michiganensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002925905.1Klebsiella michiganensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002925905.1Klebsiella michiganensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8391.1487.04
Best-match type98.8391.1487.04

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna