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ASM62138v1

Organism name:
Legionella cherrii DSM 19213 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 19213
BioSample:
SAMN02743988
BioProject:
PRJNA222237
Submitter:
DOE Joint Genome Institute
Date:
2014/04/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000621385.1 (latest)
RefSeq assembly accession:
GCF_000621385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHYM01
Assembly method:
vpAllpaths v. r46652
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 141721 [UID] 993718 [GenBank] 1125178 [RefSeq]

See Genome Information for Legionella cherrii

There are 4 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1011124
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::vpAllpaths v. r46652
country::USA
environment::Aquatic
investigation_type::bacteria_archaea
project_name::Legionella cherrii DSM 19213
sequencing_meth::WGS
ref_biomaterial::DSM 19213
rel_to_oxygen::Microaerophilic
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11606
Type Strain::Yes
Funding Program::DOE-CSP 2012
Gene Calling Method::Prodigal 2.5
Isolation Site::Water, thermally altered
Motility::Motile
Sporulation::Nonsporulating
Gram Staining::Gram-
Phenotypes::Catalase positive
##MIGS-Data-END##

Global statistics

Total sequence length3,696,762
Total ungapped length3,696,147
Gaps between scaffolds0
Number of scaffolds13
Scaffold N50791,156
Scaffold L502
Number of contigs15
Contig N50478,918
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,696,762133,696,147791,15620
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