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Source database (GenBank or RefSeq) File type

ASM61568v1

Organism name:: Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: JCM 6985
BioSample:: SAMD00008926
BioProject:: PRJDB645
Submitter:: The University of Tokyo
Date:: 2014/03/31
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000615685.1 (latest)
RefSeq assembly accession:: GCF_000615685.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: BAMG01
Assembly method:: Newbler v. 2.8
Genome coverage:: 55x
Sequencing technology:: Ion PGM

IDs: 142881 [UID] 996058 [GenBank] 1084468 [RefSeq]

See Genome Information for Lactobacillus kefiranofaciens

Pathogen Detection Resources

There are 17 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000615685.1	=	GCF_000615685.1	ASM61568v1	Contig	Latest GenBank, Latest RefSeq

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp/
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

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Global statistics

Total sequence length	2,254,088
Total ungapped length	2,254,088
Number of contigs	123
Contig N50	55,089
Contig L50	13
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	123

	ANI	Query coverage	Subject coverage
Declared type	99.97	99.60	99.47
Best-match type	99.97	99.60	99.47

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ASM61568v1

See Genome Information for Lactobacillus kefiranofaciens

Pathogen Detection Resources

There are 17 assemblies for this organism

History (Show revision history)

Comment

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