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ASM61332v1

Organism name:
Prevotella veroralis DSM 19559 = JCM 6290 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 6290
BioSample:
SAMD00011136
BioProject:
PRJDB555
Submitter:
The University of Tokyo
Date:
2014/03/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000613325.1 (latest)
RefSeq assembly accession:
GCF_000613325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAIP01
Assembly method:
Newbler v. 2.8
Genome coverage:
45x
Sequencing technology:
Ion PGM

IDs: 138541 [UID] 987258 [GenBank] 1083388 [RefSeq]

See Genome Information for Prevotella veroralis

There are 14 assemblies for this organism

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History (Show revision history)

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

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Global statistics

Total sequence length2,834,450
Total ungapped length2,834,450
Number of contigs65
Contig N5095,338
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,834,450652,834,45095,33800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prevotella veroralis DSM 19559 = JCM 6290Prevotella veroralis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000377625.1Prevotella veroralis DSM 19559 = JCM 6290suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000377625.1Prevotella veroralissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9499.6299.34
Best-match type99.9499.6299.34

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna