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ASM59086v2

Organism name:
Candidatus Liberibacter asiaticus (a-proteobacteria)
Infraspecific name:
Strain: A4
BioSample:
SAMN02665901
BioProject:
PRJNA239529
Submitter:
Crop Diseases, Pests, Genetics Research Unit San Joaquin Valley Agricultural Sciences Center, USDA
Date:
2015/10/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000590865.2 (replaced)
RefSeq assembly accession:
GCF_000590865.2 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.2.10
Expected final version:
no
Genome coverage:
138x
Sequencing technology:
Illumina MiSeq

IDs: 567411 [UID] 2546768 [GenBank] 2559568 [RefSeq]

See Genome Information for Candidatus Liberibacter asiaticus

Pathogen Detection Resources

There are 36 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Citrus Huanglongbing Lab, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, P. R. China
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be ... found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/28/2019 02:14:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,124
CDSs (total)::1,068
Genes (coding)::1,027
CDSs (with protein)::1,027
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::41
CDSs (without protein)::41
Pseudo Genes (ambiguous residues)::0 of 41
Pseudo Genes (frameshifted)::29 of 41
Pseudo Genes (incomplete)::12 of 41
Pseudo Genes (internal stop)::11 of 41
Pseudo Genes (multiple problems)::10 of 41
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,233,514
Total ungapped length1,233,514
Total number of chromosomes and plasmids1

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000590875.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010804.1=NZ_CP010804.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,233,514
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