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Source database (GenBank or RefSeq) File type

ASM52142v1

Organism name:

Cutibacterium acnes JCM 18918 (high G+C Gram-positive bacteria)

Taxonomy check:

Infraspecific name:

Strain: JCM 18918

BioSample:

SAMD00016614

BioProject:

PRJDB917

Submitter:

The University of Tokyo

Date:

2014/01/14

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

many frameshifted proteins

GenBank assembly accession:

GCA_000521425.1 (latest)

RefSeq assembly accession:

GCF_000521425.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

BAVO01

Assembly method:

Newbler v. 2.8

Genome coverage:

62.1x

Sequencing technology:

Ion PGM

IDs: 93541 [UID] 894918 [GenBank] 14338718 [RefSeq]

See Genome Information for Cutibacterium acnes

Pathogen Detection Resources

There are 504 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000521425.1	=	GCF_000521425.1	ASM52142v1	Contig	Latest GenBank, RefSeq suppressed

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

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Global statistics

Total sequence length	2,536,557
Total ungapped length	2,536,557
Number of contigs	48
Contig N50	91,807
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	48

	ANI	Query coverage	Subject coverage
Declared type	98.96	95.23	97.44
Best-match type	98.96	95.23	97.44

Assembly

Genome Assembly

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ASM52142v1

See Genome Information for Cutibacterium acnes

Pathogen Detection Resources

There are 504 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result