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ASM51922v1

Organism name:
Bradyrhizobium elkanii USDA 94 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USDA 94
BioSample:
SAMN02584917
BioProject:
PRJNA165317
Submitter:
DOE Joint Genome Institute
Date:
2014/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000519225.1 (latest)
RefSeq assembly accession:
GCF_000519225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFC01
Assembly method:
ALLPATHS v. R37654
Genome coverage:
Unknown
Sequencing technology:
454-GS-FLX-Titanium; Illumina

IDs: 92291 [UID] 892238 [GenBank] 1124958 [RefSeq]

See Genome Information for Bradyrhizobium elkanii

There are 69 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404531
Source DNA and Organism available from Nikos Kyrpides (nckyrpides@lbl.gov)
Source DNA available from Nikos Kyrpides (nckyrpides@lbl.gov)
Organism available from Nikos Kyrpides (nckyrpides@lbl.gov)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::ALLPATHS v. R37654
collection_date::1956
country::USA
environment::Host; Plant root; Root nodule; Soil
investigation_type::bacteria_archaea
lat_lon::35.772096 -78.638614
project_name::Bradyrhizobium elkanii USDA 94
sequencing_meth::WGS
biotic_relationship::Symbiotic
rel_to_oxygen::Aerobe
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi22150
Current Finishing Status::Level 1: Standard Draft
Type Strain::No
Funding Program::DOE-DD 2010
Isolation Site::North Carolina
Host Name::Glycine max
Cell Shape::Rod-shaped
Motility::Motile
Sporulation::Nonsporulating
Temperature Range::Mesophile
Temperature Optimum::28
pH::5-8
Gram Staining::Gram-
Symbiotic Relationship::Mutualistic
Diseases::None
Phenotypes::Non-Pathogen
##MIGS-Data-END##

Global statistics

Total sequence length9,558,895
Total ungapped length9,553,802
Gaps between scaffolds0
Number of scaffolds164
Scaffold N50138,573
Scaffold L5020
Number of contigs174
Contig N50138,573
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)168

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,558,8951649,553,802138,573100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradyrhizobium elkanii USDA 94Bradyrhizobium elkanii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000379145.1Bradyrhizobium elkanii USDA 76type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000379145.1Bradyrhizobium elkaniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.2581.7082.32
Best-match type96.2581.7082.32

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna