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ASM51315v1

Organism name:
Bacillus mycoides NBRC 101238 = DSM 11821 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 101238
BioSample:
SAMD00041791
BioProject:
PRJDB404
Submitter:
National Institute of Technology and Evaluation
Date:
2013/12/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_000513155.1 (latest)
RefSeq assembly accession:
GCF_000513155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAUY01
Assembly method:
Newbler v. 2.6
Genome coverage:
128x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 89111 [UID] 885748 [GenBank] 1391028 [RefSeq]

See Genome Information for Bacillus mycoides

There are 123 assemblies for this organism

See more

History (Show revision history)

Comment



Strain NBRC 101238 available from NBRC culture collection (http://www.nbrc.nite.go.jp/e/).
The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.bio.nite.go.jp/ngac/e/project_wgs-e.html)  more

Global statistics

Total sequence length5,571,630
Total ungapped length5,571,630
Number of contigs100
Contig N50102,375
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)100

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,571,6301005,571,630102,37500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus mycoides NBRC 101238 = DSM 11821Bacillus mycoides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000003925.1Bacillus mycoides DSM 2048type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000003925.1Bacillus mycoidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7083.1883.62
Best-match type97.7083.1883.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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