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Source database (GenBank or RefSeq) File type

ASM51235v1

Organism name:: Legionella oakridgensis ATCC 33761 = DSM 21215 (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC 33761 = DSM 21215; OR-10
BioSample:: SAMN02641506
BioProject:: PRJNA183980
Submitter:: Georg-August-University of Goettingen, Genomics and Applied Microbiology, Göttinger Genomics Laboratory
Date:: 2013/12/31
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000512355.1 (latest)
RefSeq assembly accession:: GCF_000512355.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Celera Assembler v. version 6.1
Sequencing technology:: 454

IDs: 88651 [UID] 884578 [GenBank] 1523148 [RefSeq]

See Genome Information for Legionella oakridgensis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000512355.1	=	GCF_000512355.1	ASM51235v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Source DNA/bacteria available from Klaus Heuner, Cellular Interactions of Bacterial Pathogens, Centre for Biological Security, Division 2 (ZBS2), Robert Koch-Institute, Nordufer 20, 13353 Berlin, Germany (HeunerK@rki.de)

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/15/2022 05:09:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,808
CDSs (total)::2,751
Genes (coding)::2,558
CDSs (with protein)::2,558
Genes (RNA)::57
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::193
CDSs (without protein)::193
Pseudo Genes (ambiguous residues)::0 of 193
Pseudo Genes (frameshifted)::169 of 193
Pseudo Genes (incomplete)::29 of 193
Pseudo Genes (internal stop)::24 of 193
Pseudo Genes (multiple problems)::26 of 193
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,773,209
Total ungapped length	2,773,209
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP004006.1	=	NZ_CP004006.1
Plasmid unnamed	CP004007.1	=	NZ_CP004007.1

Molecule	Total Length
All	2,773,209
Chromosome	2,722,964
Plasmid unnamed	50,245

	ANI	Query coverage	Subject coverage
Declared type	99.97	96.07	99.87
Best-match type	99.97	96.07	99.87

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ASM51235v1

See Genome Information for Legionella oakridgensis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

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