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ASM51235v1

Organism name:
Legionella oakridgensis ATCC 33761 = DSM 21215 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 33761 = DSM 21215; OR-10
BioSample:
SAMN02641506
BioProject:
PRJNA183980
Submitter:
Georg-August-University of Goettingen, Genomics and Applied Microbiology, Göttinger Genomics Laboratory
Date:
2013/12/31
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000512355.1 (latest)
RefSeq assembly accession:
GCF_000512355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. version 6.1
Sequencing technology:
454

IDs: 88651 [UID] 884578 [GenBank] 1523148 [RefSeq]

See Genome Information for Legionella oakridgensis

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Source DNA/bacteria available from Klaus Heuner, Cellular Interactions of Bacterial Pathogens, Centre for Biological Security, Division 2 (ZBS2), Robert Koch-Institute, Nordufer 20, 13353 Berlin, Germany (HeunerK@rki.de)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/07/2021 21:38:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,760
CDSs (total)::2,703
Genes (coding)::2,411
CDSs (with protein)::2,411
Genes (RNA)::57
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::292
CDSs (without protein)::292
Pseudo Genes (ambiguous residues)::0 of 292
Pseudo Genes (frameshifted)::270 of 292
Pseudo Genes (incomplete)::21 of 292
Pseudo Genes (internal stop)::12 of 292
Pseudo Genes (multiple problems)::11 of 292
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,773,209
Total ungapped length2,773,209
Total number of chromosomes and plasmids2

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000512365.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004006.1=NZ_CP004006.1
Plasmid unnamedCP004007.1=NZ_CP004007.1

Assembly statistics

MoleculeTotal
Length
All2,773,209
Chromosome 2,722,964
Plasmid unnamed50,245
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