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ASM50384v1

Organism name:
Salmonella enterica subsp. enterica serovar Agona str. 24249 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serovar: Agona
Infraspecific name:
Strain: 24249
BioSample:
SAMN02641385
BioProject:
PRJNA222376
Submitter:
University College Dublin
Date:
2013/12/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000503845.1 (latest)
RefSeq assembly accession:
GCF_000503845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Reference guided assembly:
NC_011149.1
Genome coverage:
30x
Sequencing technology:
Sanger dideoxy sequencing; 454

IDs: 84341 [UID] 867638 [GenBank] 871598 [RefSeq]

See Genome Information for Salmonella enterica

There are 535031 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/07/2023 08:17:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,595
CDSs (total)::4,476
Genes (coding)::4,367
CDSs (with protein)::4,367
Genes (RNA)::119
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::12
Pseudo Genes (total)::109
CDSs (without protein)::109
Pseudo Genes (ambiguous residues)::0 of 109
Pseudo Genes (frameshifted)::46 of 109
Pseudo Genes (incomplete)::77 of 109
Pseudo Genes (internal stop)::13 of 109
Pseudo Genes (multiple problems)::25 of 109
Pseudo Genes (short protein)::1 of 109
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,762,840
Total ungapped length4,762,840
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000503865.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006876.1=NC_022991.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,762,840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Agona str. 24249Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010649825.1Salmonella enterica subsp. enterica serovar Typhimuriumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010649825.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7092.5790.17
Best-match type98.7092.5790.17

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna